Hi Riq,
Its more noticable when its being animated, but I can explain a little more detail of what is happening. Let say you have characters that can walk left and right on the screen.
The characters are using 1 sprite sheet, the characters going right (its original animation) everything is ok. The characters going left (using FlipX on the sprite) the character bounces back and fourth. It just looks like its ignoring offsets, looks like the animation frames are all aligned on the right edge instead of keeping them centered with offsets.
I can try to make a movie and send you a link if you need to see it, I will also try to debug the issue myself as well.
thanks